Publications of Francisco M Couto
From XLDB
URL | BibTeX source
Tiago Grego, Francisco Pinto, Francisco Couto, LASIGE: using Conditional Random Fields and ChEBI ontology.Proceedings of the International Workshop on Semantic Evaluation (SemEval2013) 2013.
Tiago Grego, Francisco Pinto, Francisco Couto, LASIGE: using Conditional Random Fields and ChEBI ontology.Proceedings of the International Workshop on Semantic Evaluation (SemEval2013) 2013.
Document | BibTeX source
Miguel Costa, Daniel Gomes, Francisco M Couto, Mário J. Silva, A Survey of Web Archive Search Architectures.Proceedings of the 3rd Temporal Web Analytics Workshop Rio de Janeiro, Brazil, 2013.
Miguel Costa, Daniel Gomes, Francisco M Couto, Mário J. Silva, A Survey of Web Archive Search Architectures.Proceedings of the 3rd Temporal Web Analytics Workshop Rio de Janeiro, Brazil, 2013.
URL | BibTeX source
Tiago Grego, Francisco Couto 2013: Enhancement of Chemical Entity Identification in Text Using Semantic Similarity Validation. PLOS ONE 5(8), e62984.
Tiago Grego, Francisco Couto 2013: Enhancement of Chemical Entity Identification in Text Using Semantic Similarity Validation. PLOS ONE 5(8), e62984.
URL | BibTeX source
João Ferreira, Daniela Paolotti, Francisco Couto, Mário J. Silva 2012: On the usefulness of ontologies in epidemiologic research and practice. Journal of Epidemiology and Community Health.
João Ferreira, Daniela Paolotti, Francisco Couto, Mário J. Silva 2012: On the usefulness of ontologies in epidemiologic research and practice. Journal of Epidemiology and Community Health.
URL | BibTeX source
Catia M. Machado, Ana T. Freitas, Francisco Couto, Enrichment analysis applied to disease prognosis. Em: M. Boeker, H. Herre, R. Hoehndorf, F. Loebe (Ed.), 4th Workshop on Ontologies in Biomedicine and Life Sciences (OBML) September, 2012.
Catia M. Machado, Ana T. Freitas, Francisco Couto, Enrichment analysis applied to disease prognosis. Em: M. Boeker, H. Herre, R. Hoehndorf, F. Loebe (Ed.), 4th Workshop on Ontologies in Biomedicine and Life Sciences (OBML) September, 2012.
Document | BibTeX source
Tiago Grego, Francisco Pinto, Francisco Couto, Identifying Chemical Entities based on ChEBI.Proceedings of ICBO 2012.
Tiago Grego, Francisco Pinto, Francisco Couto, Identifying Chemical Entities based on ChEBI.Proceedings of ICBO 2012.
URL | BibTeX source
Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.
Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.
Poster | BibTeX source
João D. Ferreira, Francisco M. Couto, Semantic Similarity in the Biomedical Domain. Braga, Portugal. Poster @ Bioinformatics Open Days 2012. 2012
João D. Ferreira, Francisco M. Couto, Semantic Similarity in the Biomedical Domain. Braga, Portugal. Poster @ Bioinformatics Open Days 2012. 2012
Presentation | BibTeX source
Francisco M. Couto, João D. Ferreira, João Zamite, Carlos Santos, Tiago Posse, Paulo Graça, Dulce Domingos, Mário J. Silva, The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies.International Conference on Biomedical Ontologies (ICBO) 2012.
Francisco M. Couto, João D. Ferreira, João Zamite, Carlos Santos, Tiago Posse, Paulo Graça, Dulce Domingos, Mário J. Silva, The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies.International Conference on Biomedical Ontologies (ICBO) 2012.
Document | Presentation | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.
Document | BibTeX source
Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas, Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy.3rd International Conference on Information Technology in Bio- and Medical Informatics (ITBAM 2012) 2012. Springer-Verlag GmbH Berlin Heidelberg.
Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas, Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy.3rd International Conference on Information Technology in Bio- and Medical Informatics (ITBAM 2012) 2012. Springer-Verlag GmbH Berlin Heidelberg.
Document | BibTeX source
Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.
Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.
URL | Poster | BibTeX source
João D. Ferreira, Francisco M. Couto, Mário J. Silva, Ontologies in the Epidemiological Domain. Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases. 2012
João D. Ferreira, Francisco M. Couto, Mário J. Silva, Ontologies in the Epidemiological Domain. Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases. 2012
Document | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.
João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.
BibTeX source
Zamite, J., Silva, F., Couto, F., Silva, M. 2011: MEDCollector: Multisource epidemic data collector. Transactions on Large-scale Data-and Knowledge-centered Systems IV: Special Issue on Database Systems for Biomedical Applications (6990), 40--72.
Zamite, J., Silva, F., Couto, F., Silva, M. 2011: MEDCollector: Multisource epidemic data collector. Transactions on Large-scale Data-and Knowledge-centered Systems IV: Special Issue on Database Systems for Biomedical Applications (6990), 40--72.
BibTeX source
Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.
Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.
DOI | URL | BibTeX source
Francisco Couto, Mário J. Silva 2011: Disjunctive Shared Information between Ontology Concepts: application to Gene Ontology. Journal of Biomedical Semantics.
Francisco Couto, Mário J. Silva 2011: Disjunctive Shared Information between Ontology Concepts: application to Gene Ontology. Journal of Biomedical Semantics.
URL | BibTeX source
T. Simões, N. Charro, J. Blonder, Daniel Faria, Francisco Couto, K.C. Chan, T. Waybright, H.J. Isaaq, T.D. Veenstra, D. Penque 2011: Molecular profiling of the human nasal epithelium: A proteomics approach. Journal of Proteomics.
T. Simões, N. Charro, J. Blonder, Daniel Faria, Francisco Couto, K.C. Chan, T. Waybright, H.J. Isaaq, T.D. Veenstra, D. Penque 2011: Molecular profiling of the human nasal epithelium: A proteomics approach. Journal of Proteomics.
Document | BibTeX source
Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.
Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.
Document | BibTeX source
Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.
Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.
Document | BibTeX source
Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.
Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.
Document | BibTeX source
João D. Ferreira, Francisco Couto, Generic semantic relatedness measure for biomedical ontologies.Proceedings of ICBO 2011.
João D. Ferreira, Francisco Couto, Generic semantic relatedness measure for biomedical ontologies.Proceedings of ICBO 2011.
Document | BibTeX source
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.
Document | BibTeX source
Hugo Bastos, Francisco Couto, Pedro M. Coutinho, Exploring Gene Ontology relationships in Enzyme Families: An application to Polysaccharide Lyases (as a poster).9th Carbohydrate Bioengineering Meeting p. 67, May, 2011.
Hugo Bastos, Francisco Couto, Pedro M. Coutinho, Exploring Gene Ontology relationships in Enzyme Families: An application to Polysaccharide Lyases (as a poster).9th Carbohydrate Bioengineering Meeting p. 67, May, 2011.
Document | BibTeX source
Silvio Moreira, David Batista, Paula Carvalho, Francisco Couto, Mário J. Silva, POWER - Politics Ontology for Web Entity Retrieval.ONTOSE 2011: 5th International Workshop on Ontology, Models, Conceptualization and Epistemology in Social, Artificial and Natural Systems 2011.
Silvio Moreira, David Batista, Paula Carvalho, Francisco Couto, Mário J. Silva, POWER - Politics Ontology for Web Entity Retrieval.ONTOSE 2011: 5th International Workshop on Ontology, Models, Conceptualization and Epistemology in Social, Artificial and Natural Systems 2011.
BibTeX source
Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.
Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.
BibTeX source
Francisco Couto, Ivan Andrade, Pedro Gonçalves, Paulo Verissimo, Benchmarking some Portuguese ST system research units Technical Report. Technical Report . DI FCUL Tecnical Report, 2010.
Francisco Couto, Ivan Andrade, Pedro Gonçalves, Paulo Verissimo, Benchmarking some Portuguese ST system research units Technical Report. Technical Report . DI FCUL Tecnical Report, 2010.
Document | BibTeX source
Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas, Semantic Characterization of Hypertrophic Cardiomyopathy Disease.First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10), held in conjunction with The IEEE International Conference on Bioinformatics % Biomedicine (BIBM 2010) 2010.
Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas, Semantic Characterization of Hypertrophic Cardiomyopathy Disease.First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10), held in conjunction with The IEEE International Conference on Bioinformatics % Biomedicine (BIBM 2010) 2010.
Document | BibTeX source
Luis Filipe Lopes, Fabrício A. B. Silva, Francisco Couto, Mário Silva, Epiwork Epidemic Marketplace Metadata Application Profile Technical Report. Technical Report . Lasige - FCUL, September 2010.
Luis Filipe Lopes, Fabrício A. B. Silva, Francisco Couto, Mário Silva, Epiwork Epidemic Marketplace Metadata Application Profile Technical Report. Technical Report . Lasige - FCUL, September 2010.
Document | BibTeX source
Mário J. Silva, Francisco Couto, Dulce Domingos, Juliana Duque, Hugo Ferreira, Luís F. Lopes, Daniela Paolotti, Fabrício Silva, Patrícia Sousa, João Zamite, D 3.3 Public Release of the Epidemic Marketplace Platform Technical Report. Technical Report . LASIGE, University of Lisbon, Faculty of Sciences, September 2010.
Mário J. Silva, Francisco Couto, Dulce Domingos, Juliana Duque, Hugo Ferreira, Luís F. Lopes, Daniela Paolotti, Fabrício Silva, Patrícia Sousa, João Zamite, D 3.3 Public Release of the Epidemic Marketplace Platform Technical Report. Technical Report . LASIGE, University of Lisbon, Faculty of Sciences, September 2010.
