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BibTeX source
@InProceedings{Pombinho.etal:Understanding:2013,
  author       = {Paulo Pombinho and Ana Paula Afonso and Maria
                 Beatriz Carmo},
  title        = {Understanding the Role of Historical Context in a
                 Point of Interest Recommendation System.},
  booktitle    = {GRAPP/IVAPP 2013: Proceedings of the International
                 Conference on Computer Graphics Theory and
                 Applications and International Conference on
                 Information Visualization Theory and
                 Applications.},
  year         = {2013},
  isbn         = {}, WorldCat | Amazon
  editor       = {},
  year         = {2013},
  page         = {537-541},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  optproject   = {vismobile},
  bibdate      = {2013-07-17},
}

BibTeX source
@InProceedings{Pesquita.etal:WhatsInA:2013,
  author       = {Catia Pesquita and Daniel Faria and Cosmin Stroe
                 and Emanuel Santos and Isabel F Cruz and
                 Francisco M Couto},
  title        = {What's in a 'nym'? Synonyms in Biomedical Ontology
                 Matching},
  booktitle    = {International Semantic Web Conference},
  editor       = {},
  year         = {2013},
  page         = {526-541},
  volume       = {},
  series       = {},
  publisher    = {Springer Berlin Heidelberg},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-11-02},
}

BibTeX source
@Inproceedings{Lamurias.etal:ChemicalCompoundAnd:2013,
  author       = {Andre Lamurias and Tiago Grego and Francisco Couto},
  title        = {Chemical compound and drug name recognition using
                 CRFs and semantic similarity based on ChEBI},
  booktitle    = {Proceedings of the fourth BioCreative challenge
                 evaluation workshop},
  year         = {2013},
  bibdate      = {2013-10-07},
  project      = {ICE} document =
                 {Lamurias.etal:ChemicalCompoundAnd:2013\_document.pdf},
  document     = {},
}

BibTeX source
@InProceedings{Costa.etal:QuerySuggestionFor:2013,
  author       = {Miguel Costa and João Miranda and David Cruz and
                 Daniel Gomes},
  title        = {Query Suggestion for Web Archive Search},
  booktitle    = {Proceedings of the 10th International Conference
                 on Preservation of Digital Objects},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Lisbon, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-10-07},
  poster       = {},
  presentation = {},
}

BibTeX source
@Article{Bastos.etal:AnnotationExtensionThrough:2013,
  author       = {Hugo Bastos and Luka A. Clarke and Francisco M.
                 Couto},
  title        = {Annotation extension through protein family
                 annotation coherence metrics},
  titleaddon   = {},
  journal      = {Frontiers in Genetics},
  volume       = {4},
  number       = {201},
  year         = {2013},
  pages        = {},
  keywords     = {},
  url          = {},
  doi          = {10.3389/fgene.2013.00201},
  issn         = {1664-8021},
  opturl       = {http://www.frontiersin.org/bioinformatics\_and\_computational\_biology/10.3389/fgene.2013.00201/abstract},
  optproject   = {BOA, coherenzy},
  bibdate      = {2013-09-25},
  document     = {},
}

BibTeX source
@Article{Teixeira.etal:ANon-contiguousAtom:,
  author       = {Ana L. Teixeira and Andre O. Falcao},
  title        = {Noncontiguous atom matching structural similarity
                 function},
  titleaddon   = {},
  journal      = {Journal of Chemical Information and Modeling},
  volume       = {53},
  number       = {10},
  year         = {2013},
  pages        = {2511-2524},
  keywords     = {     },
  url          = {},
  project      = {ASSUME, Therminfo},
  doi          = {10.1021/ci400324u}},
  bibdate      = {2013-09-19},
}

BibTeX source
@Article{Ferreira.etal:ExploitingDisjointnessAxioms:,
  author       = {João D Ferreira and Janna Hastings and Francisco
                 M Couto},
  title        = {Exploiting disjointness axioms to improve semantic
                 similarity measures},
  journal      = {Oxford Bioinformatics},
  journal      = {Bioinformatics},
  pages        = {btt491},
  year         = {2013},
  publisher    = {Oxford Univ Press} volume = {},
  opturl       = {http://bioinformatics.oxfordjournals.org/content/early/2013/09/03/bioinformatics.btt491.abstract},
  optproject   = {SOMER},
  bibdate      = {2013-09-09},
  document     = {},
}

BibTeX source
@InProceedings{Ferreira.etal:DigitalPreservationOf:2013,
  author       = {João D. Ferreira and Catia Pesquita and Francisco
                 M. Couto and M{\'a}rio J. Silva},
  title        = {Digital preservation of epidemic resources:
                 coupling metadata and ontologies},
  booktitle    = {Proceedings of the 10th International Conference
                 on Preservation of Digital Objects},
  year         = {2013},
  bibdate      = {2013-08-30},
  project      = {Epiwork},
  document     = {},
}

BibTeX source
@TechReport{Zamite.etal:D36-Report:2013,
  author       = {João Zamite and João D. Ferreira and Paulo
                 Graça and Carlos Santos and Tiago Posse and
                 C{\'a}tia Pesquita and Dulce Domingos and
                 Francisco Couto and M{\'a}rio J. Silva},
  title        = {D3.6 - Report: Final Specification of the Epidemic
                 Marketplace Platform and Evaluation Results},
  institution  = {FCUL},
  year         = {2013},
  month        = {July},
  opturl       = {},
  optnumber    = {},
  optnote      = {},
  project      = {Epiwork},
  bibdate      = {2013-07-31},
  document     = {},
}

BibTeX source
@InProceedings{Goncalves.etal:STTrajVis:2013,
  author       = {Tiago Goncalves and Ana Paula Afonso and Bruno
                 Martins and Daniel Gonçalves},
  title        = {ST-TrajVis: Interacting with Trajectory Data},
  booktitle    = {Proceedings of the 2013 British Computer Society
                 Conference on Human-Computer Interaction, BCS HCI
                 2013.},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {(accepted)},
  optproject   = {},
  projet       = {sinteligis},
  bibdate      = {2012-07-30},
}

BibTeX source
@InProceedings{Zamite:DiscretionaryAccessControl:2013,
  author       = {João Zamite and Dulce Domingos and M{\'a}rio J.
                 Silva and Carlos Santos},
  title        = {Group-Based Discretionary Access Control for
                 Epidemiological Resources},
  optcrossref  = {},
  optkey       = {},
  booktitle    = {HCist 2013 - International Conference on Health
                 and Social Care Information Systems and
                 Technologies},
  optpages     = {},
  year         = {2013},
  opteditor    = {},
  optvolume    = {},
  optnumber    = {},
  series       = {Procedia Technology},
  optaddress   = {},
  month        = {October},
  optorganization = {},
  publisher    = {Elsevier},
  optnote      = {},
  optannote    = {},
  project      = {EPIWORK} document =
                 {Zamite:DiscretionaryAccessControl:2013\_document.pdf},
}

BibTeX source
@InProceedings{Goncalves.etal:ComparisonOfOff-screen:2013,
  author       = {Tiago Goncalves and Ana Paula Afonso and Maria
                 Beatriz Carmo and Paulo Pombinho},
  title        = {Comparison of Off-screen Visualization Techniques
                 with Representation of Relevance on Mobile
                 Devices},
  booktitle    = {Proceedings of the 2013 British Computer Society
                 Conference on Human-Computer Interaction, BCS HCI
                 2013},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  optproject   = {vismobile},
  bibdate      = {2013-07-17},
}

BibTeX source
@InProceedings{Teixeira.etal:ImprovingQSPRModels:2013,
  author       = {Ana L. Teixeira and João P. Leal and Andre O
                 Falcao},
  title        = {Improving QSPR models for predicting standard
                 enthalpy of formation with a hybrid approach for
                 feature selection (as a poster)},
  booktitle    = {CQB - Day 2013},
  editor       = {},
  year         = {2013},
  page         = {70},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {July},
  address      = {Faculdade de Ci{\^e}ncias da Universidade de
                 Lisboa, Portugal},
  url          = {},
  optnote      = {},
  project      = {ASSUME, ThermInfo},
  bibdate      = {2013-07-08},
  document     = {},
}

BibTeX source
@Misc{Santos:AccessControlFor:2013,
  author       = {Carlos Santos, Dulce Domingos, João Zamite
                 Paulo Graça, M{\'a}rio J. Silva},
  title        = {Access Control for Shared Epidemic Datasets},
  titleaddon   = {},
  howpublished = {Poster @ Epiwork International Workshop "Digital
                 Epidemiology"},
  address      = {Turin, Italy},
  project      = {EPIWORK},
  publisher    = {},
  url          = {},
  docname      = {},
  year         = {2013},
  keywords     = {},
  poster       = {},
}

BibTeX source
@Misc{Pesquita:Semi-AutomatedAnnotationOf:2013,
  author       = {Catia Pesquita, João D. Ferreira, Francisco M.
                 Couto, M{\'a}rio J. Silva},
  title        = {Semi-Automated Annotation of Epidemiological
                 Resources},
  titleaddon   = {},
  howpublished = {Poster @ Epiwork International Workshop "Digital
                 Epidemiology"},
  address      = {Turin, Italy},
  project      = {EPIWORK},
  publisher    = {},
  url          = {},
  docname      = {},
  year         = {2013},
  keywords     = {},
  poster       = {},
}

BibTeX source
@InProceedings{Grego:LASIGEUsingConditional:2013,
  author       = {Tiago Grego and Francisco Pinto and Francisco
                 Couto},
  title        = {LASIGE: using Conditional Random Fields and ChEBI
                 ontology},
  booktitle    = {Proceedings of the International Workshop on
                 Semantic Evaluation (SemEval2013)},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {FiBRE,EPIWORK},
  bibdate      = {2013-05-22},
}

BibTeX source
@InProceedings{Gomes.etal:SearchThePast:2013,
  author       = {Daniel Gomes and David Cruz and João Miranda and
                 Miguel Costa and Simão Fontes},
  title        = {Search the Past with the Portuguese Web Archive},
  booktitle    = {Proceedings of the Demos Track of the 22nd
                 International World Wide Web Conference},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Costa.etal:ASurveyOf:2013,
  author       = {Miguel Costa and Daniel Gomes and Francisco M
                 Couto and M{\'a}rio J. Silva},
  title        = {A Survey of Web Archive Search Architectures},
  booktitle    = {Proceedings of the 3rd Temporal Web Analytics
                 Workshop},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Gomes.etal:CreatingABillion-Scale:2013,
  author       = {Daniel Gomes and Miguel Costa and David Cruz and
                 João Miranda and Simão Fontes},
  title        = {Creating a Billion-Scale Searchable Web Archive},
  booktitle    = {Proceedings of the 3rd Temporal Web Analytics
                 Workshop},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {May},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@Article{Grego.etal:EnhancementOfChemical:2013,
  author       = {Tiago Grego and Francisco Couto},
  title        = {Enhancement of Chemical Entity Identification in
                 Text Using Semantic Similarity Validation},
  titleaddon   = {},
  journal      = {PLOS ONE},
  volume       = {8},
  number       = {5},
  year         = {2013},
  pages        = {e62984},
  keywords     = {},
  url          = {},
  project      = {FiBRE,EPIWORK},
  bibdate      = {2013-05-07},
}

BibTeX source
@Article{Ferreira.etal:OnTheUsefulness:2012,
  author       = {João Ferreira and Daniela Paolotti and Francisco
                 Couto and M{\'a}rio J. Silva},
  title        = {On the usefulness of ontologies in epidemiologic
                 research and practice},
  titleaddon   = {},
  journal      = {Journal of Epidemiology and Community Health},
  volume       = {},
  number       = {},
  year         = {2012},
  pages        = {},
  keywords     = {},
  url          = {},
  project      = {EPIWORK},
  bibdate      = {2013-03-21},
}

BibTeX source
@TechReport{Teixeira.etal:AutomatedIdentificationAnd:2013,
  author       = {Ana L. Teixeira and João P. Leal and Andre O.
                 Falcao},
  title        = {Automated Identification and Classification of
                 Stereochemistry: Chirality and Double Bond
                 Stereoisomerism},
  institution  = {LaSIGE, Department of Informatics, Faculty of
                 Sciences, University of Lisbon},
  year         = {2013},
  month        = {February},
  url          = {},
  optnumber    = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-27},
  document     = {},
}

BibTeX source
@InProceedings{Goncalves.etal:VAMD:2012,
  author       = {Tiago Goncalves and Ana Paula Afonso and Bruno
                 Martins},
  title        = {Visual Analysis of Mobility Data},
  booktitle    = {International Conference on Mobile Data Management},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {(accepted)},
  optproject   = {},
  projet       = {sinteligis},
  bibdate      = {2012-07-30},
}

BibTeX source
@Article{Teixeira.etal:RandomForestsFor:2013,
  author       = {Ana L. Teixeira and João P Leal and Andre O
                 Falcao},
  title        = {Random forests for feature selection in QSPR
                 Models - an application for predicting standard
                 enthalpy of formation of hydrocarbons},
  titleaddon   = {},
  journal      = {Journal of Cheminformatics},
  volume       = {5},
  number       = {9},
  year         = {2013},
  url          = {},
  doi          = {10.1186/1758-2946-5-9},
  project      = {ThermInfo, ASSUME},
  bibdate      = {2013-02-11},
}

BibTeX source
@InProceedings{Falcao.etal:B3InfoAn:2013,
  author       = {Andre O Falcao and Luis Pinheiro and Ana L.
                 Teixeira},
  title        = {B3Info -- An information system for molecular
                 Blood-Brain Barrier penetration data (as a
                 poster)},
  booktitle    = {Beating the Blood-Brain and other Blood Barriers},
  editor       = {},
  address      = {Lisbon, Portugal},
  year         = {2013},
  page         = {57},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-07},
  document     = {},
}

BibTeX source
@InProceedings{Teixeira.etal:ImprovingBloodBrain:2013,
  author       = {Ana L. Teixeira and Andre O Falcao},
  title        = {Improving Blood Brain Barrier Penetration in
                 silico Models with a Hybrid Approach for
                 Descriptor Selection (as a poster)},
  booktitle    = {Beating the Blood-Brain and other Blood Barriers},
  editor       = {},
  address      = {Lisbon, Portugal},
  year         = {2013},
  page         = {40},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-07},
  document     = {},
}

BibTeX source
@InProceedings{Machado.etal:EnrichmentAnalysisApplied:2012,
  author       = {Catia M. Machado and Ana T. Freitas and Francisco
                 Couto},
  title        = {Enrichment analysis applied to disease prognosis},
  booktitle    = {4th Workshop on Ontologies in Biomedicine and Life
                 Sciences (OBML)},
  editor       = {M. Boeker, H. Herre, R. Hoehndorf, F. Loebe},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {September},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {HCM},
  bibdate      = {2012-07-27},
}

BibTeX source
@TechReport{Teixeira:ThermInfoCollecting:2013,
  author       = {Ana L. Teixeira and Rui C. Santos and João P.
                 Leal and Jos{\'e} A. Martinho Simões and Andre
                 O. Falcao},
  title        = {ThermInfo: Collecting, Retrieving, and Estimating
                 Reliable Thermochemical Data},
  institution  = {LaSIGE, Department of Informatics, Faculty of
                 Sciences, University of Lisbon},
  year         = {2013},
  month        = {January},
  url          = {},
  optnumber    = {},
  optnote      = {},
  project      = {ThermInfo},
  bibdate      = {2013-02-06},
  document     = {},
}

BibTeX source
@MastersThesis{Reis:ThermInfo20-:2012,
  author       = {Rony Reis},
  title        = {ThermInfo 2.0 - Estruturação e concretização
                 de um sistema de informação para propriedades
                 qu{\'i}micas},
  month        = {December},
  school       = {Faculty of Sciences of the University of Lisbon},
  year         = {2012},
  opturl       = {},
  optnote      = {},
  project      = {ThermInfo},
  bibdate      = {2013-01-31},
  document     = {},
}

BibTeX source
@InProceedings{Costa.etal:EvaluatingWebArchive:2012,
  author       = {Miguel Costa and M{\'a}rio J. Silva},
  title        = {Evaluating Web Archive Search Systems},
  booktitle    = {Proceedings of the 13th International Conference
                 on Web Information Systems Engineering},
  editor       = {X. Sean Wang and Isabel Cruz and Alex Delis and
                 Guangyan Huang},
  year         = {2012},
  page         = {440--454},
  volume       = {},
  series       = {Lecture Notes in Computer Science},
  publisher    = {Springer Berlin Heidelberg},
  month        = {November},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2012-12-11},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Grego.etal:IdentifyingChemicalEntities:2012,
  author       = {Tiago Grego and Francisco Pinto and Francisco
                 Couto},
  title        = {Identifying Chemical Entities based on ChEBI},
  booktitle    = {Proceedings of ICBO},
  year         = {2012},
  project      = {FiBRE,BOA},
  opturl       = {http://kr-med.org/icbofois2012},
  document     = {},
}

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